As the episode starts, Goodchild has perfected a method of copying humans. Determined to put an end to the operation, Æon and a fellow agent, Scaphandra who is a double-agent for Bregna, cross the border into Bregna. Scaphandra has lost parts of her feet during a previous crossing and has had hands transplanted to replace the missing parts of her feet. As Æon rushes towards Trevor's base of operations, Scaphandra is captured and taken to Trevor Goodchild who takes a sample of her for copying. Æon comes in, frees Scaphandra and tackles Trevor about the ethics and inner purposes of his operation. Deliberately presenting an opportunity for Trevor, Æon allows him to take a sample of her though Æon smashes Scaphandra's sample. After Æon leaves, Trevor copies Æon for himself. It is revealed to be a complex plot by Æon to ...

This episode focuses on a massive battle between the leather-clad, dark-haired Monicans and the Aryan soldiers of Bregna with Æon Flux in the thick of battle. During the course of the battle, Æon cuts down dozens of guards before she is knocked down by a Breen guard who had been playing dead. Æon sees another Monican agent creeping up on the guard and keeps him distracted with alluring tongue movements but the Breen sees the Monican agent and ...

This episode begins with Æon lying on a stone slab, waking from a dream where she was screaming. We then flash back to earlier where Æon and Trevor are making their individual ways to a Breen research base researching an ancient virus that apparently causes insanity and formed a basic part of early humanity until humans developed an immunity. Æon is cornered by the Breen soldiers near the base but is sucked down and finds that although the base has been there for under a month, it looks like it has been derelict for centuries. There, Æon finds a young boy who guides her through the base and eventually shows her a vial of virus, the only intact vial out of a set of five. There is also a giant fanged baby, apparently the first test subject for the virus, stalking the caves ....

The episode opens with Æon chasing Bambara, a vicious man who frequently causes injury or death to those he encounters. Æon, ignoring his victims, pursues him through a train and onto a building site. Bambara escapes Æon killing a construction worker in the process but is captured by Trevor Goodchild. He inserts a strange robot into Bambara through the man's navel and he suddenly loses his darker side, becoming friendly to those around him and quickly befriending an orphan. Trevor says the robot is a 'Custodian', an artificial conscience of his creation which he hopes to implant in all citizens. Æon then meets up with an organization of women who are opposed to Trevor's project who are planning to remove the implanted Custodians and bring the operation to an end. Æon goes after Bambara's Custodian ....

Trevor has designed a satellite, Aldis B which will help speed up the evolution of humanity but could also kill off half the living population of the Earth. Æon, determined to stop Trevor from using the satellite, steals and buries the remote. Æon, avoiding the search parties, finds a hibernation pod holding a strange alien with removable eyes, psionic abilities. The alien does not breathe, eat or have genitals. The Alien is captured by one of the search parties but saves Æon when one of its captor throws a fire bomb. Trevor examines the Alien and sees signs of exposure to Aldis B. Trevor heads off to find the alien's ship. The Alien escapes and follows him, finding both Trevor and Æon at the ship. Aldis B has killed off everyone on the ship leaving only the alien who had been awaiting rescue in its pod. Æon and Trevor make love in the ship while the Alien watches. The next day, the Alien finds Æon and offers her one of its own eyes but Æon refuses. Æon offers to show the Alien human sexual pleasure ...

In this episode, Æon is on an assassination mission. She infiltrates her target's home via a maintenance ladder. On her entry she falls from the ladder, and notices she is spied on by a security camera. While walking down a hallway she notices a room where the security camera recorder is being kept, and enters. She goes to destroy the tape but at the last minute decides to review the footage. The picture is faulty because of a loose video jack shorting against an air vent. Æon goes to fix the connection but spills coffee on her gloved arm. Unnoticed by the departing Æon, footage of another intruder previously entering the building plays on the monitor. While washing her arm, Æon accidentally sprays water on herself in the bathroom's shower and spoils her signature hairstyle ...

The story starts with a battle between Monican agents and Breen forces. Æon and the Monicans had captured an astral being called the Demiurge which is threatening to dangerously warp people's view of the world and are preparing to launch it into space aboard a rocket. Trevor is determined to stop them believing that the Demiurge will ensure a lasting peace for humanity. The Demiurge instills parts of itself in earthly Avatars: a cat, a bird and a resurrected Monican agent named Nader before the rocket launch is attempted ....

The episode starts with Æon catching a fly with her eyelashes. We then cut to an apparent battle between Monican agents and Breen forces, with Æon liberally mowing down dozens of soldiers on her quest to apparently assassinate a Breen Official, though most of them are already sick and dying from a strange disease carried by an azure beetle. As hundreds of soldiers die in the sewers, Trevor Goodchild finds and takes in one of the beetles, hiding it in his finger and carrying it with his lover to the top of the building where Æon's target is sleeping. While Æon has traveled up onto the roof she unwittingly picked up a tack from a loose cable fastening on the sole of her boot.

At the start of the episode Æon is preparing to penetrate a Breen prison disguised as a guard. In the prison, Trevor is keeping compromising photographs of himself and Æon having sex with the price of their return being a Narghile. Narghiles are a mysterious controlled species, apparently immortal, that produce a memory-wiping drug called 'Bliss'. During her escape, Æon runs into a female prisoner called Muriel killing her in self defense after mistaking her for a guard. As Æon escapes, she encounters and leaves with a Monican called Rordy ...

As the episode opens, Æon and Trevor are kissing through the windows of their transports, with the former being in a plane and the latter being in a train. As they do, Trevor uses his tongue to open up Æon's fake tooth and place a rolled up picture inside. After the two of them part, Æon spies an industrial vehicle driving past. Æon then retrieves the picture from her tooth to find it is a photo of a fellow passenger, and a suitcase. She climbs out and moves along the side of the plane to spy on the man, who is reading documents from the same suitcase. Æon must jump mid-air to the back of the plane to get inside, but she misses and falls ...