Flapjack and K'nuckles consume too much of a new drink at the Candy Barrel, and it turns them into fish.

Flapjack tries to clear K'nuckles' name when he is accused of stealing candy.

Flapjack keeps getting mistaken for a girl so he and Captain K'nuckles attempt to literally "man him up", only to discover that his voice is the problem.

K'nuckles gets a new face to avoid a mob after stealing boots but ends up caught in the mob.

Desperate to find a younger sibling after Captain K'nuckles calls him "a baby" out of annoyance, Flapjack asks Bubbie where babies come from and mistakenly adopts a duck as his new "baby brother".

Believing K'nuckles to be a bad influence Bubbie tells Flapjack to stop following the pirate, but to lead him instead. Unfortunately, after taking the advice of an animal trainer Flapjack accidentally hypnotizes K'nuckles into believing he is a seal.

For Flapjack's birthday K'nuckles, Bubbie, and Flapjack sail west in search of Candied Island.

Flapjack makes Doctor Barber a friend out of candy.

K'nuckles bets Flapjack in a poker game, resulting in the two having a falling-out. K'nuckles replaces Flapjack with a young boy named Kid Nickels, while Flapjack becomes a banker's apprentice. K'nuckles ends up missing Flapjack and challenges the banker to win him back.

In a scheme to trade wrappers with Peppermint Larry in exchange for candy, K'nuckles and Flapjack search for a "+" because Peppermint Larry says he will give them 100 pieces of candy in exchange for it.

Captain K'nuckles steals a mermaid queen's heart filled with wishes (in the form of candy) so he and Flapjack can go to Candied Island, but they quickly misuse the wishes and learn a terrible secret about the mermaid.

Taunted by a rich boy for being poor, Flapjack and Captain K'nuckles search for diamonds that the rich boy claims are in the sewers of Upper Stormalong Harbor.

Flapjack tries to break Captain K'nuckles' candy addiction after he develops a severe case of "candy rot".

Flapjack and K'nuckles befriend the richest lady in Stormalong, Lady Nickelbottoms, to steal from her mansion (which is made from candy). When their plans go awry, K'nuckles finds himself challenging Lord Nickelbottoms in a candy-based duel to the death.

After Flapjack brags about Bubbie's speed, he ends up involving himself, K'nuckles, and Bubbie in a race through the Sea of Teeth against an evil inventor and his mechanical Alpha-Whale.

Flapjack pretends to be a dog for Lady Nicklebottoms, while K'nuckles experiences the joys of owning a dog.

Bubbie falls in love with a whale named Harvey, who kidnaps Captain K'nuckles and Flapjack to work in his factory on Laundry Island – unknown to Bubbie, who thinks they are ignoring her.

While doing their laundry K'nuckles and Flapjack decide to spy on Bubbie, to find out what she does all day.

When Flapjack helps Captain K'nuckles look for his lost hat on an island filled with chimpanzees, they end up encountering a researcher living among them. With her help, they must reach the "secret meeting place": an active volcano whose crater K'nuckles must cross so he can get his hat back.

Flapjack, Captain K'nuckles, and Bubbie journey to the Bottom of the World to reclaim K'nuckles' long-lost "sittin' muscle" (his buttocks).

When Captain K'nuckles believes he has found a map to Candied Island, he wants Flapjack to read it to reach their destination. However, Flapjack (in dire need of a haircut) cannot. They go to Doctor Barber for a haircut, only to find that the barber has stolen the map.

Flapjack and Captain K'nuckles suffer from a severe case of foot burn (sunburned feet) after sleeping in the sun. On their quest to treat it, they discover a hideous trolley driver whom K'nuckles knew from his past.

The evil inventor's twin brother builds a "Grand Flying Contraption" to impress Bubbie, on whom he has a crush. However, when Bubbie does not return the same feelings (she sees him as a friend, rather than a love interest) he becomes very sad. Because of this, Flapjack and crew are inadvertently led into danger.

When Peppermint Larry falls sick, Flapjack and K'nuckles are forced to go fishing for food.

After an argument involving Bubbie's tooth door, Flapjack and Captain K'nuckles decide to disguise themselves as each other for the day to see whose life is more difficult.

Flapjack and Captain K'nuckles struggle to escape from the Dock Hag's house after a feeble attempt at sabotaging K'nuckles' dock tickets, only to discover that the Dock Hag has a crush on the old captain.

Bubbie becomes jealous of K'nuckles' new boat, while unbeknownst to the trio, the boat's original owner seeks to kill Flapjack and K'nuckles.

When K'nuckles wins a contest for being Stormalong's laziest man, the original owner of the title gets revenge by kidnapping Flapjack.

K'nuckles is bullied by a group of sailors in the Candy Barrel, and Flapjack tries to convince him he is not a wimp.

When K'nuckles continues to trick people and blame ghosts, Flapjack consults Jayde, the resident ghost expert of Stormalong, to see if ghosts really do exist.

The Dock Hag catches Flapjack and Captain K'nuckles littering and sentences them to community service collecting fish heads. Doctor Barber offers to pay them for the heads (much to their delight), but they soon discover his true intentions for the fish heads.

The outrageous adventurer Ponce de Lee-Roy convinces K'nuckles he's an immortal.

When a storm hits Stormalong, Flapjack and K'nuckles offer to help the town in exchange for candy.

Flapjack and K'nuckles wreak havoc on civilization in the clouds.

Captain K'nuckles refuses to take a census conducted by Flapjack, due to a misunderstanding. Unfortunately, the census takers who assigned this duty to Flapjack are actually a group of pirates wanting to take over Stormalong.

Flapjack finds he may have a problem with cuddling after a night sleeping outside, so he tries to find the cause and a cure.

K'nuckles becomes infested with termites.

Flapjack causes an infestation of non-lucky cats in Stormalong, leaving him and K'nuckles to fix the problem.

K'nuckles needs to get fancy pants to get into the new VIP section of the Candy Barrel.

Dr. Barber leaves Flapjack and K'nuckles to look after his barbershop/clinic with one important rule: they must not open a drawer. As a result, they are very curious about what is in the drawer.

Flapjack becomes upset when an embarrassing picture of him appears in the paper.

There are dire consequences when Flapjack switches places with a sailor.

Flapjack and K'nuckles attempt to befriend two old men who possess a treasure chest from Candied Island.

K'nuckles and Flapjack are stranded on a strange island and are unable to find the ocean.

When Flapjack discovers some fresh fruit (which hasn't been seen in years) and Captain K'Nuckles eats it, the two head to an island to get some more but a mysterious plant man keeps getting in the way.

K'nuckles challenges Peppermint Larry to a game of pool to settle the ownership of Candy Wife.

Flapjack learns to balance a board on the waves (surfing) and becomes Stormalong's biggest film star.

K'nuckles tries to prove he's a captain by visiting a sunken ship to collect his captain's papers.

Sally Syrup returns to Stormalong (much to her dismay) and Flapjack must convince her that Stormalong is not all that bad.

Flapjack tries to help Lolly Poopdeck get respect when he gets tired of being a laughingstock.

When Captain K'nuckles believes he has accidentally cursed Flapjack with the inability to speak he tries to find a cure, only to discover it to be a ruse by Flapjack to attend the local Knot Festival.

K'nuckles and Flapjack visit a storytelling club, where K'nuckles finds out that his own stories may be outdated.

Flapjack has to capture Eight-Armed Willy to prove he is worthy of being a real adventurer.

Flapjack celebrates Low Tide Day and awaits his gifts from Poseidon, while K'nuckles tries to find a place to hide from the mermen for being a naughty person.