With the deadly virus spreading throughout the city, the search for the antidote continues, as Fish Mooney, The Riddler and Penguin reveal plans of their own. Bruce meets Ra's al Ghul and completes his last task in order to fulfill his destiny, but realizes he can't let go of his past. Meanwhile, Gordon tries to win back Lee, and past alliances within Gotham City are broken, while new alliances are formed.

As violence between Maroni and Falcone continues to escalate, Penguin reveals a new element of his manipulative strategy, forcing Gordon to deal with the consequences of his decision to spare Penguin’s life

As Gotham City’s gang war reaches its boiling point, Fish Mooney goes head-to-head with Maroni and Penguin in an attempt to re-stake her claim on the city. Meanwhile, Barbara and Leslie Thompkins are brought together after recent events, and Bruce searches Wayne Manor for any hints that his father might have left behind.

With the deadly virus spreading throughout the city, the search for the antidote continues, as Fish Mooney, The Riddler and Penguin reveal plans of their own. Bruce meets Ra's al Ghul and completes his last task in order to fulfill his destiny, but realizes he can't let go of his past. Meanwhile, Gordon tries to win back Lee, and past alliances within Gotham City are broken, while new alliances are formed.

The series flash-forwards 10 years into the future, as Bruce is set to return to Gotham for the opening of the new Wayne Tower. A series of crimes leads Gordon to believe Penguin and The Riddler are up to their old tricks. However, when Bullock is framed for a murder, Gordon begins to piece together an even more sinister plot targeting the city, and a new figure emerges from the shadows to be the hero Gotham desperately needs.

Jeremiah warns a skeptical Gordon of more destruction coming Gotham's way, and Gordon is forced to make a potentially devastating decision. Meanwhile, Barbara rallies together a team to secure her position, as alliances in the underworld shift and prove no one can be trusted. Then, Bruce is forced to come to terms with the future.

As Gotham falls into complete anarchy, a team of unlikely heroes step up to save it. Bullock takes the lead at the GCPD and Bruce's psychological limits are tested as those close to him are put in danger.

When Bruce Wayne is kidnapped, Gordon must look to some unlikely and dangerous allies for help. It is a battle of the villains, and not everyone makes it out alive.

Gordon confronts a suspect who is connected to Galavan, but falls short of obtaining any information. Meanwhile, Bruce gets one step closer to discovering the name of his parent's killer.

On the heels of his reinstatement, Gordon is thrust onto the high-profile case tracking the deadly inmate escape from Arkham Asylum. Meanwhile, Galavan plans his next move, while Bruce asks for help from his father's old friend to unlock the secrets in his office, and Nygma asks out Kristin Kringle on a date.

In an attempt to clear his name, Gordon steals his case file and approaches Nygma for help. Meanwhile, Penguin discovers his step-family's role in his father's death, and awakens from his conditioning.

While Gordon, Bruce and Lucius remain at Indian Hill, the city of Gotham will be met with a new threat as Hugo Strange's inmates devise a plan to escape and start their new lives in Gotham.

With Jerome on the loose with one target in mind, Bruce and Alfred's safety is compromised. Meanwhile, Gordon's uncle Frank pays him a visit, and Nygma and Penguin are forced to confront their issues face-to-face, with possible deadly consequences.

Azrael is on the loose in Gotham City, which sparks Penguin's need for revenge. Meanwhile, Bruce enlists the help of Selina Kyle to help track down Professor Strange, as he evades arrest for his experiments.

Gordon races against the clock to save the city from the Alice Tetch Virus, when Lee Thompkins intercepts with a plan of her own. Also, Alfred sees a big change in Bruce Wayne after his work with The Shaman. Meanwhile, some of Gotham's most deranged villains band together.

When a killer begins targeting the first born of Gotham's elite, Bullock is forced to confront traumatic memories from a nearly identical case he worked in the past. Gordon is confronted by past decisions.

Following a misstep, Gordon is reassigned to duty at Arkham Asylum. Meanwhile, Selina leads a new friend on a perilous journey through Gotham to evade the assassins after her.

Gordon and Bullock track down a nemesis from the past, leading to a standoff between Jerome and Gordon. Meanwhile, a magic show at the Gotham Children's Hospital gala turns into a hostage situation.

Hugo Strange welcomes a familiar face to Gotham after he resurrects Fish Mooney in Indian Hill. Later, Bruce discovers a friend is in danger and teams up with Gordon, Alfred and Lucius, while uncovering more of Strange's experiments.

On the run from Gordon and Bullock, Dwight tries to revive Jerome, in turn, activates his acolytes around Gotham City. Meanwhile, Selina's mom's intentions in Gotham are revealed, and the power play between Penguin and Nygma escalates as Barbara's plans are set in place.

The Ogre breaks down Barbara’s emotions, while Gordon and Bullock go to great lengths to track him down. Meanwhile, Penguin leads a massacre, beginning an epic war, while Bruce learns the truth about Wayne Enterprises and Nygma deals with his recent actions.

Butch leads Penguin and his men to the warehouse where Gertrude is being held, as Penguin plots his revenge on Galavan for kidnapping his mother. Meanwhile, Nygma deals with the aftermath of a deadly accident.

Gordon and Bruce question Professor Strange about project chimera which leads Strange to send the newly resurrected Galavan to confront Gordon. Meanwhile, Gordon investigate's who Professor Strange is.

Things get complicated for Gordon, Sophia and Penguin when Carmine Falcone comes to town. Alfred tries to get through to Bruce once and for all, while Nygma struggles to gain control over The Riddler persona and Tabitha attempts to make Grundy remember his past.

Gordon and Bullock follow a trail of clues in a robbery, not knowing they were left by Nygma; Gordon receives an anonymous threat; Penguin meets his father; Bruce works on his street smarts.

After leaving Arkham Asylum, Barbara attempts to make amends with Gordon. Then, Bruce and Alfred track down one of Thomas Wayne's former friends from Project Chimera, but Hugo Strange disrupts their plans.

Gordon and Bullock investigate a Gothamite who runs a deadly fight club for candidates applying to work at his financial firm. Bruce returns to school and gets a visit from a new friend.

As the virus begins to spread in Gotham, the laboratory that is developing a cure is compromised. Mario and Gordon face off before the wedding, Selina meets an unexpected face and Barbara comes to Nygma with information about Isabella.

Galavan sends Barbara after Jim Gordon, while he tries to make a business deal with Bruce Wayne. Barnes and Bullock are hot on Barbara's trail, and Nygma has a run-in with a familiar face.

After Gordon is removed from protective custody, he begin's to face new threat's and danger's inside prison wall's in order to survive he must rely on a new friend as well as Bullock and other outside help. Meanwhile, Penguin grow's closer to his Father, while his step-mother and step-siblings move forward with their own plan's for the family.

After Gordon is shot in an attempt to establish a cease-fire, he hallucinates a trial for his life that could have deadly real consequences. Meanwhile, Ivy returns and puts her spell on Bruce, leaving Selina to defend herself. Lee has a life-changing moment as Barbara and Penguin consider their next moves.

Bullock's past comes back to haunt him when he and Gordon investigate two murders at Sirens. Meanwhile, Bruce and Alfred explore the tunnels beneath the city, and Penguin and Nygma's plans to escape are thwarted by the least likely of suspects.

Gordon’s assignment at Arkham Asylum gets off to a rocky start when the murder of a guard ignites an investigation, leading him to meet Dr. Leslie Thompkins. Cobblepot continues to build his army.

Gordon and Penguin are forced to work together and alliances are shaken when Lucius, Nygma and Barbara all have different ideas of the culprit behind recent events at Haven. Selina continues her quest for revenge against Jeremiah.

Gordon assembles an unlikely team to protect Gotham from Eduardo Dorrance and his Delta Force. Just as Lee Thompkins resurfaces, Barbara reveals shocking news that will change Gordon's life forever. Meanwhile, Selina and Penguin team up to outsmart fellow villain Magpie.

A military task force, led by Eduardo Dorrance is called in to provide relief to Gotham. Meanwhile, Nygma looks for answers from Penguin, who leads him back to Hugo Strange. Then, Bruce is concerned about Selina's recent behavior.

On the precipice of Gotham's reunification, Gordon and Bruce find themselves face-to-face with a newly transformed Eduardo, and discover the real mastermind behind the city's current chaos. Meanwhile, a pregnant Barbara turns to Lee for help.

With the creation of Haven as a safe place for refugees, Gordon hopes to stop the gang fighting in Gotham. Selina is determined to find Jeremiah and she convinces Bruce to help her. Penguin goes to Haven to reclaim his staff.

As Bane enacts his final plan for Gotham's destruction, Gordon rallies his former enemies to save the city. Meanwhile, Nyssa al Ghul kidnaps Barbara's newborn daughter, with ambitions to raise her as her own. Then, Bruce's decision to leave Gotham points him to his destiny, while devastating Selina.

Gordon and Bullock are hot on a serial killer who has been assassinating cops and dressing his victims in the severed heads of pigs as his signature mark. Meanwhile, Sofia tries to win over Penguin, and Thompkins, Nygma and Grundy find themselves an unlikely home at Cherry's place.

Gordon and Bullock investigate a location where several kids have been kidnapped. Barbara proves to be an unlikely ally to Gordon. Bruce looks into an alleged witch with healing powers for Selina. Nygma deals with demons of his own.

Gordon is called to the scene after The Toy Maker is hired to assassinate one of Gotham's doctors. Lee Thompkins begins to try to rebuild the Narrows, with Nygma as her partner. Meanwhile, Alfred's new life in the Narrows becomes quite complicated. Ivy reveals her new persona to Selina, with some sinister plans in mind.

Hypnotist Jervis Tetch/Mad Hatter arrives in Gotham to search for his sister, Alice, and hires Gordon to help find her. Meanwhile, Penguin decides to run for mayor and Bruce's doppelganger begins to channel him, causing some confusion around town.

Ivy tracks a secret project on which Wayne Enterprises is working and begins to target anyone that can give her information. Meanwhile, Jerome becomes obsessed with Penguin in Arkham. Also, Gordon begins to second guess his deal with Sofia and an unsettling dream sequence shakes up Bruce.

Fish Mooney reveals a secret of Oswald Cobblepot's, prompting Maroni to take him on a trip to test his loyalty. Meanwhile, Gordon and Bullock hunt down a killer who targets victims with severe phobias and Bruce Wayne confronts Gordon for failing to make progress on his parents' murder case.

Gordon tries to broker a deal with Penguin that involves Sofia. Meanwhile, Alfred tries to pull Bruce out of his teenage-angst and downward spiral, as Lee Thompkins gains more control over the Narrows.

Ivy picks her next target, leading Gordon and Lucius back to an old friend, as Selina tries to take matters into her own hands. Sofia wants full control of Gotham and turns to Lee about the state of the Narrows. Meanwhile, Bruce tries to make amends with Alfred, and Nygma visits Arkham.

When the key witness in a homicide ends up dead while being held for questioning by the police, Gordon suspects that it’s an inside job and looks to an old friend for information. Meanwhile, Oswald Cobblepot takes control of one of Fish Mooney’s prized possessions, as she gets a gets a small taste of her own medicine.

Fish Mooney takes matters into her own hands to locate Hugo Strange, forcing Gordon to reluctantly team up with journalist Valerie Vale to find her. Penguin rises in popularity after criticizing the work of the GCPD and Bruce's investigation of the Court of Owls is compromised. Meanwhile, Ivy Pepper is reintroduced into Gotham city.

Bruce Wayne puts the lives of Gotham Natural History Museum historian Niles Winthrop and his grandson, Alex, in danger in an attempt to uncover the meaning behind his prized knife from the auction. Meanwhile, Ra's Al Ghul proves he'll take deadly measures to achieve what he wants. Also, with Sofia Falcone in town, she is on a mission to win back Gotham from Penguin.

Gordon seeks information about the controversy involving Loeb; Fish's allegiance with the prisoners is questioned; and Bruce copes with the aftermath of an attack close to home.

Falcone places a hit on Gordon after learning that he shot Mario. Gordon and Bullock discover a follower of Jerome, who plans to bring him back to life. Meanwhile, Penguin spirals out of control before the biggest television interview of his Mayoral career, and Bruce and Selina deal with Selina's mom's return to Gotham.

Gordon races to uncover the criminal element threatening to end talks of Gotham's reunification with the mainland. A very much alive Jeremiah returns and organizes a twisted recreation of the murder of Bruce's parents with the help of Jervis Tetch aka Mad Hatter.

Professor Pyg continues to torment Gotham city, involving Jim Gordon whenever possible. Sofia and Penguin get ready for a fundraiser for the orphanage, and things don't go as planned when Professor Pyg shows up as the chef. Meanwhile, Bruce's partying gets in the way of his relationship with Alfred.

Galavan and Penguin join forces with a dangerous family in Gotham. Then, as the rivalry between the Waynes and the Galavans resurfaces, Gordon struggles to maintain order in the city.

After coming in contact with a substance by the hand of Mad Hatter, Jim Gordon gets led on a psychedelic trip and must confront his past, present and future. Meanwhile, Penguin struggles with Nygma's new relationship.

Arkham's "finest" give Gordon and Bullock a run for their money, as they hatch a plan to escape the asylum. Meanwhile, Bruce devises his own strategy to thwart their plans. Also, Barbara gets an offer she can't refuse.

Following several bank robberies, Gordon and Bullock investigate the Red Hood gang. Selina Kyle continues to bond with Barbara, and Fish Mooney tries to reclaim her position in the underworld.

Gordon and Bullock try to stay one step ahead as Jerome zeros in on his next target. Meanwhile, Nygma hosts a riddle game show in the Narrows and faces his toughest challenger in Lee Thompkins, and Penguin goes to see Butch with a proposal.

Nygma comes face-to-face with Butch Gilzean, but he is not who he used to be. In an attempt to regain power and identity, Nygma decides to put his former partner's skills to the test. Meanwhile, Sofia Falcone takes action to protect her own life by appealing to Penguin's vulnerable side. With the power of the dagger in his possession, Bruce surprises those around him with his bold actions.