The Zeta Project Episode Rating Graph

Zeta breaks into a security base to steal a database containing retinal IDs, then breaks into Cyrobin disguised as a Dr. Wilhelm. His creator, Dr. Selig, is working at Cyrobin. Things go amiss when the real Dr. Wilhelm shows up before Zeta can communicate with his creator and prove his innocence. Selig is caught in a cyrogenic freeze unit when a stray shot shatters the control. With the lab in lockdown, Zeta is forced to remain hooked up to Selig's suspension unit and maintain his life. The authorities are breaking in, so Zeta takes a risk and tries to go into the unit, using his internal heaters to revive Selig. At the risk to his own ""life"", Zeta succeeds, but is forced to flee before Selig regains consciousness. Meanwhile, Agent Bennett is being shut out of the investigation by a mysterious Colonel Lomak, and Agent Lee resigns after giving away Bennett's plans to Lomak.

Agent Bennett still believes that the captured Zeta has been programmed to believe he is acting of his own volition, a suspicion that seems to be borne out when the research team discovers a previously unknown chip in Zeta's head. Roe plans a rescue but it goes amiss when Zeta protects his memories from removal by transferring them from sector to sector. This results in the activation of his old killer-type programming. He goes on a rampage but Roe manages to get through to him and they manage to escape the NSA compound.

Zeta and Ro break into an NSA depot used to store holograms/robots. They spot Professor Zelig, who downloads information and leaves. The two follow him to a steel yard where he is revealed to be Professor Edmunds, who worked on Zeta's hologram projectors. He is being blackmailed by Sweet, the head of Brother's Day, an anti-tech terrorist organization. They get Edmunds to work with them to lead them to Selig, unaware that Brother's Day has followed them to the hologrammatically concealed floating fortress where Zeta's creator is working to create semi-organic synthoids. Sweet plants an explosive as a disguised Zeta confronts his creator who confesses he secretly planted a "conscience chip" in Zeta (which Bennett overhears). Sweet triggers the explosion before Zeta can reveal who he is. Sweet shoots the escape pod with Selig as he escapes and the scientist is believed dead.

Zeta and Roe are rescued from Bennett by three hackers who claim to be Internet hacker types who want to free technology for the people. They're sort of right: however, they plan to dissect Zeta to find out how he ticks, while one of their members, obsessed fan Buss, keeps Roe prisoner. Roe and Zeta both manage to escape, but Bennett arrives. In the subsequent pursuit, Buss rescues Roe but Zeta is captured and taken in by Bennett in preparation for a complete CPU wipe. (to be continued)

Forced to take refuge from a tornado, Ro and Zeta meet two brothers, Dex and Carl, who are using an experimental process to disrupt tornados. They partially succeed, and the two fugitives join up with to get moving when their car is destroyed. With Zeta's input Carl the smart one manages to come up with a complete process, but pilot Dex gets the glory. Carl goes off on his own to take on another tornado and gets in over his head. With Zeta and Ro's help Dex rescues his brother and the two settle their differences.

Zeta and Roe are on the trail of one of Selig's associates, who is in a business/administrative area, the Hub. However, it's a trap set by Dr. Boyle, who attached a credit-nullifier to Zeta. In return for removing it, the two must steal items for Boyle for his research. Further complicating matters are Agents West and Rush trying to track them down. Eventually Zeta and Roe manage to lose the agents and set up Boyle to remove the nullifier and then be spotted by the NSA agents, while making their escape.

After a brutal attack of Infiltration Unit Seven in a Gotham City shopping mall, Zeta has to take Ro to a hospital. Believing Zeta is solely responsible for the mall destruction, Batman vows to take him down before he can hurt anybody. Meanwhile, Zee contemplates abandoning Ro so she will not be put at risk anymore.