Johnny Terelli (Capone's brother) comes to visit but doesn't tell Eddie that he is being pursued by both an FBI agent and a murderous Russian mobster. (Endangering his room mates, Spoon and Ice.) Country musician Gary Allan gives Kate and Mad Dog backstage passes and sings Smoke Rings in the Dark. And the saga of the toy animal mascot continues.

Burner, Hammer and Kelly are on a carrier. Burner's plane loses radio reception and navigation after possibly being struck by lightning during a storm. Because of heavy rain he cannot see the carrier and he may run out of fuel and crash. Back on shore Spoon and Ice nearly become romantic before Capone alerts them about the danger Burner is in, whereupon they rush to base.

Swamp has a loss of confidence both in his flying and when he tries to romance Holly ""of Hollywood."" Burner competes against a new instructor from Top Gun who can't accept losing even though instructors are supposed to be able hold back. Pearly, who was one of Hammer's trainers, is trying to requalify in order to take a fleet assignment, but he seems to have lost his skills.

During a community relations day, a orphaned boy living with his aunt is kidnapped for ransom.

Burner may lose his wings for causing a sonic boom while showing off for two women. Also Kate may lose her bar when an underage woman is found with a drink.

While Hammer and Kelly go on a top secret mission, Burner and Spoon find they have their hands full when they try to look after Kelly's ostensibly prim and proper niece. (It is revealed that Hammer was briefly a P.O.W. during the Gulf War.)

Breaker's plane suffers a hydraulic failure and she dies trying to land the plane.

Spoon and Teri start an affair. Breaker does not get a S.O.D. for extremely bad flying and then Spoon, thinking about Teri, gets a S.O.D. for approaching the wrong runway, causing friction. A reporter does a negative story about the treatment of female pilots. Burner talks Teri into staying away from Spoon while she thinks things over instead of staying with him.

Ice's plane has a major mechanical problem during her first solo flight and her confidence is shaken, Burner is covers up a water jet ski injury so he won't be grounded until he is 100% healthy and Spoon and his father's girlfriend, Teri, start falling for each other when they spend time together.

Ice takes her first flight with Kelly/Raider as her I.P. (Instructor Pilot) in the backseat. Burner is grounded by Hammer for losing his temper when a snob hits his motorcycle but ultimately proves himself and takes his first flight with Hammer as his I.P. Spoon's father, T.H., visits. He surprises Spoon with a girlfriend who is about 2 years younger than Spoon. Spoon is very rude to her. However the sparks fly when T.H. takes business meetings and the two spend the day together.

Kelly is assigned to train neophyte jet pilots (Nuggets). Hammer, his second in command; Kate, a bar owner; and three nuggets, Burner, Ice and Spoon are introduced.

A redhead, who made a pass at Bobby, drugs and murders a Strike Team Cobra for his security pass. She is part of a group of robbers impersonating Cobras who are stealing guidance plans. The Sea Dragons, who are unarmed, discover that their exercise has turned real when the robbers murder a guard. Also Linstrom has a date, Craig, and Janine goes out with Randy after seeing the redhead kiss Bobby.

Conaway, Lindstrom and a third marine are hijacked by two men who have gambling debts. Conaway is shot and falls out of the helicopter and the others land on a small island. The third Marine is badly wounded but Conaway's wound is minor and he swims to the island and gets one of the hijacker's guns. However the criminal whom the hijackers owe arrives. Meanwhile Kelly, Griffin and McCrae are evaluating equipment from a sales representative whom Griffin romances. Griffin turns down her pass, however. The equipment may prove useful when they discover the others are missing and try to go on rescue mission.

The druglord, Ramon Toledo, captured in the previous episode has a deal. He will receive an operation and a kidney from his brother, Miguel in return for information. This upsets Kelly, whose complaints, in turn, upset Dr. Valerie West. But the druglord has a hidden agenda. He has his brother's wife and children kidnapped so he can force his brother to help him escape. Bobby, who is in the hospital, from a minor volleyball injury, suspects something but has nothing concrete. Kelly goes with the team to a bar, the Tailwind, and discovers Janine is working there and sees that she is dating Bobby who is brawling with a guy who harassed Janine. Bobby learns who Janine's father is. The druglord sends Kelly and his team on a one way mission to rescue two DEA agents while he escapes with his brother and Valerie as hostages. It is up to Kelly and the Sea Dragons to survive and set things right.

After Col. Ballinger is injured during a traing exercise, Lt. Colonel Bill Kelly, a pilot, asked to take command of the Sea Dragons by Col. Rebecca Hodges. It is a four person team including First Lt. Robert/Bobby Griffin, a jet pilot; First Lt. Annalisa/ Analise Linstrom, a helicopter Huey pilot, First Lt. Wendell McCrae/McCray, a computer and electronics specialist and First Lt. A.J. Conoway/ Conaway an explosives expert.''''Their first mission is to save a DEA plane whose pilot has been injured in Central/South America. Meanwhile Bobby has started romancing Jeanine/Janine who is Kelly's daughter.

The Sea Dragons are called upon when an African ambassador is suspected of stealing plutonium.

The Sea Dragons try to stop a biological weapon, a virus called the Grey Ghost, from being sold by arms dealers. Janine starts seeing an old boyfriend, Zach, because Bobby keeps breaking their dates for work reasons.

When a pilot and his plane disappear with an experimental stealth device, he is suspected of being involved with a militia group.

The Sea Dragons try to protect two foreign dignitaries from assassination on their way to peace talks.

When fears of a terrorist attack cause a special exercise to be delayed, the assassin sneaks away and becomes a threat to Kelly and Hammer. Kate returns, considering another's marriage proposal when she gets no encouraging signs from Kelly. Spoon and Ice's relatonship heats up to the point that Kelly says one of them will have to be reassigned elsewhere.

Agent Catarez asks for the Sea Dragons' help in dealing with an arms dealer, Javier Nuñez (Nunez) entering the U.S. illegally. The arms dealer escapes but Bobby's father, Robert Griffin, is captured and was assisting him. Bobby tries to convince his father to help them.

A top secret experimental weapon that is missing from a USAF plane is found by a boy, Casey. The Sea Dragons are sent to recover the weapon but someone else is also looking for it. In their personal lives Janine goes apartment hunting and A.J. interferes when Annalisa flirts with a guy.

In San Diego for a convention, the Sea Dragons must prevent the deranged Maj. Egan from stealing a laser weapon and taking vengeance against those he believes responsible for the deaths of his men.

A test pilot, Peter Allenson, has problems during the testing of a new missle firing system. When the problems go unreported he warns Bobby who is about to test the system and he dies in a hit and run accident. Is there a problem with the system? Was Allenson murdered? The team investigates. Meanwhile Janine finds herself upset that her father is dating Valerie.

A.J. helps a pretty woman, Rita Garcia, by preventing her purse from being snatched. Then he finds the Naval Criminal Investigation Service suspects him of espionage. Meanwhile Bobby is competing against other pilots, including ""Hammer,"" for an instructor position.

After a bird shatters the canopy of his jet, Griffin is injured both physically and emotionally, and may be permanently grounded.

While patrolling the no fly zone in Iraq, Kelly is shot down with Griffin in the back seat. While they try to avoid capture, the other Sea Dragons are frustrated in their attempts to help join the search and rescue. Back home Dr. Valerie West tries to reassure Janine.

After Seaton Palmer, an Irish terrorist with the R.F.I. is captured with nerve gas, Kelly and the Sea Dragons investigate. Annalisa Lindstrom and A.J. Conaway try going on a date. At the end of the episode Kelly is trying to decide which member of the team to let go due to budget cutbacks.

A hot shot German pilot shows off and annoys Burner, scares Spoon with his (off screen) reckless driving and romances Ice. But he has a problem which may ground him. Also Spoon gets the wrong idea when Kate asks him probing questions to plan a surprise birthday party for him.

A young man shows up at the Bucket and informs Hammer that he is his son and that his mother has died. The Nuggets train to fly using instrumentation only because at night or in clouds after making high gee moves they can get vertigo and become disoriented. Burner and Spoon volunteer to become judges at a ""talent contest"" (Miss Pensacola).

On the carrier, Kristi Blake, an actress planning to play a female pilot, studies and bunks with (and annoys) Ice. Spoon thinks of resigning. He confides in Ice about his father's cancer. Burner tries to argue Spoon out of resigning and learns that Spoon's father has cancer. Swamp is unable to make the trap (landing wires) at night and washes out. Burner's plane has a hydraulic problem and he is forced to try an emergency landing.

The Sea Dragons are sent to Korea to try and help get a defector across the border. Kelly's budding romance with Dr. West is interupted by the reassignment. Kelly decides to help Tomlin, a former navy man whose daughter is missing (she is being held prisoner by a nightclub.) McCray tries to romance a translator teaching him Korean. Robert finds out the woman running the nightclub is being tipped off by a pilot, Fingers, whom they thought was helping them. After they finish their mission the Sea Dragons rescue the girl too.

When a sheriff comes by investigating a former member of the Sea Dragons who washed out and his possible link to attempted shootings, the team takes leave to investigate. And Kelly seeks more parenting help from Dr. West.

During a rescue mission one of the pow's is killed and with his dying words he accuses Linstrom. She is placed on trial. Bobby dates a woman he met on the beach and spends the night with her. By the end of the episode AJ and Annalisa are necking.

The Sea Dragons are sent to rescue hostages in a Carribean nation but their efforts are endangered when a billionaire, whose daughter is one of the hostages, sends in a team of mercenaries to launch a frontal assault.

A man in Kelly's Vietnam unit is burned. It seems to have something to do with the accidental bombing of a village in which 30 or 40 civilians were killed. Kelly was in the hospital during the day of the raid. The operations officer, Joe Damian, got the coordinates wrong, and was tried, but considers himself a scapegoat. Kelly talks to another man from the unit, ""Jer"" Jeremy Britt who winds up dead from a car bomb. Kelly gets a photo of the bombing which is a threat that he is next. Janine's romance with Zach is interupted when Bobby happily horns in using the excuse that he is her bodyguard.

The SeaDragons are sent in civilian clothing to investigate who hacked into a military computer. The ""company town"" they are sent to employs computer programmers and is developing software for the government. A.J. and AnnaLise kiss, albeit undercover. (As part of a cover story when they are discovered where they shouldn't be.)

The Nuggets go to Fallon Air Base to learn low level bombing, where a shifty Lt. Colonel makes trouble for them. Spoon is doubtful when told he is jinxed after breaking an Indian artifact. Burner falls for a woman whose abusive boyfriend turns out to also be her boss. An old friend lodges a complaint against Kelly.

High-scoring Ice is made Strike Leader for a fiercely competitive bombing exercise against missle and fighter defenses. Spoon is attracted to Gunslinger, a pretty blonde operator of missle defenses. Jackal, still angling to obtain Kelly's command, intends to cheat during the Class Strike. And things escalate personally for Burner as he continues his attempts to help the woman with the abusive boyfriend.

A former Blue Angel leader is now recruiting and he offers Hammer a position on the Blue Angels. He also begins a romance with Kate. Burner and Spoon try to play matchmaker between Kate and Kelly. Meanwhile a retired general who is a fan of Teddy Roosevelt drops by and takes the unit on a fifty mile march with full gear.