Takatoshi Tsuda, on his first day of high school, is recruited to join Ousai Academy's student council as the vice president. Shino gives him a tour of the school. They go over some school rules and start a suggestion box. Hata interviews Shino for the school paper, but the process seems to resemble that of an eroge.

Takatoshi is surprised to find Uomi at his house, ready to make dinner. Shino arrives with food and they have friendly rivalry. They watch a DVD of an old film and stay the night. Aria and Suzu visit the next day and help clean. Hata tries to figure out some slogans for the council members, and rumors arise concerning Takatoshi and Shino. Igarashi slips on the stairs but is saved by Takatoshi. As Aria and Shino go to graduation, Takatoshi and Suzu do some council activities on their own. Takatoshi and Suzu catch up to Aria and Shino and ask why they are leaving without saying goodbye. They then reveal that they have not graduated yet (it was the end of Takatoshi’s first year) and they are actually holding sushi rolls, of which they make dirty jokes.

Some gags about the art pieces in class. Suzu feels under the weather so the council has her rest in the infirmary for the school day. Shino shows Uomi the different locales on campus, but they interpret each place with something sexual. Uomi offers some concerns about the placement of the men's restroom. Aria has a spot on guessing an object based on its silhouette shape. Gags about allergies and mouse pads. Takatoshi makes a poster. The girls ask Takatoshi for tissues. Uomi asks Takatoshi if there's a girl he likes. And a follow-up to the squid episode where Hata is done with her part but Aria shows up.

The student council celebrates the new year. Yokoshima catches a cold. Takatoshi receives chocolates for Valentine’s Day. Kotomi does her entrance exam and interview for Ousai.

The council review some of the school rules. The council plans surprise club inspections but is concerned about leaks. They try using a secret code involving tops and bottoms, which is misinterpreted by Hata. Takatoshi helps Shino with her cellphone but is shocked by her message. The council and Kotomi visit Eiryou High School for their cultural festival. As winter comes, the council shovels snow at school and have stew party in the dark at Takatoshi’s house. At night, Shino dresses as Santa and gives everyone presents.

The council members talk about food and the summer weather. An assortment of jokes from the manga. It starts to rain. Hata photographs the council members as they model the new school swimsuits. On the way home, they cut through a park. The judo girls have marathon practice by running into town, but Toki gets lost. A stray cat visits campus. The council holds a send-off assembly for the judo club.

Aria and Shino sell an SYD bicycle. Jokes about lettering. The council receives some gifts from various clubs. Shino tries out the different clubs, and finds she is good at everything. Takatoshi and Kotomi pull out a telescope; the council girls join them to look at the stars. The council gets the school swimming pool ready for use. The day of the pool opening, Shino forgets to bring underwear. Takatoshi and Kotomi compare grades. Yokohama has an English lesson.

Takatoshi asks Kotomi to act as vice president while his class goes to Okinawa. Nene has some gags involving her device. Kotomi joins Aria and Shino in morning inspections. As the class tours Okinawa, Hata appears and asks Takatoshi to check on two teachers that seem to be flirting with each other. Suzu gets separated from the group; the students and teachers look for her. When Yokohama freaks out over a display stand for spotted dick, they find Suzu. Shino ponders whether to call Takatoshi. The next day, the class visits a lighthouse and has fun at the beach; Shino, Aria and Kotomi do the same. The class feeds fish underwater while wearing diving helmets. Kotomi asks Shino whether she and Takatoshi are dating, so Shino calls Takatoshi. When Suzu and Takatoshi return they share some snacks they bought.

The council prepares for sports day. Takatoshi writes a surprisingly touching story. The council participates in various sports day events for their class, and then as a team for the final group relay.

The council visits Aria's home and meets her maid Dejima. Takatoshi sees school reporter Hata on her daily activities. The school conducts a cultural festival.

The council investigates some of the scary school legends. Yokoshima shows the council a porn magazine she confiscated. The council visits Mutsumi's judo club. Shino gets the hiccups. The council prepares for a day at the beach.

Ousai Academy starts a new school year. Suzu's dog, Boa, visits the school. Takatoshi's little sister joins as a first year. The student council gets concerned about improper relationships at school. Another squid scene with Takatoshi where he sprays milk on a model butt. Mutsumi sets up a match with Toki, where Toki would have to join the judo club if she loses.

The council members visit a New Year’s sale. They talk about New Year’s resolutions. Squid and Takatoshi segments are back: Takatoshi removes milky slime off of Suzu’s jacket. Jokes about shoes, lunch. Mutsumi recruits for a judo team manager, and does other activities with the team. Dejima teaches the council girls how to make chocolate for Takatoshi. Nene’s history lesson is about a plant stalk that is the shape of a dildo. While shopping for White Day gifts, Takatoshi meets Uomi, and then the other girls gather. To conclude the Squid and Takatoshi segments, Takatoshi checks the girls for alibis. Shino makes lunch for the Tsudas. Afterwards, when Tsuda says goodbye to Shino, he surprisingly meets with Uomi, which makes the girls jealous.

Takatoshi has a cold and receives a visit from Shino, whose activities are misinterpreted by Takatoshi's sister Kotomi. Later, Shino must honor her commitment of being photographed at the swimming pool. Aria asks Shino for advice on a crush she has. Yokoshima tries to trap Takatoshi in a classroom. The council makes a web page.

The council plans events for sports day. Suzu visits Takatoshi's house and meets Kotomi. Shino is scared when a bug flies into the room. Discipline Committee head Kaede Igarashi confronts the council about their activities at the inn. When one of the judo members gets injured, Shino volunteers to take her place.

Takatoshi helps Kotomi prepare for the Ousai Academy interviews. Random gags about the cold weather, and misunderstandings. The council cleans up the club room, and then celebrates Christmas at Aria's vacation house.