Five Fafner pilots in Tatsumiya Island gained a new power named Super Demension Phenomenon. Alvis began to investigate about changed Urd, and considered how to send Kazuki and Soshi with their Fafners to Srinagar even just a little faster.

Sui, Reo, and Mimika get promoted regular pilots. Canon names new 3 Fafners. Jonathan meets Miwa and Yumiko for the first time. Akira wants to enlist in the detachment to fight with Perseus Company, but Rina is against him strongly. Kazuki begins to be able to see Tsubaki holding a baby in a vision.

Srinagar is destroyed by Festum. When the most of them prepare for the worst, 2 heroes come flying. Meanwhile, Dustin of Argos Platoon suggests to Commander Kamal of Dacca Base that Neo-UN should issue ROE Alpha to Srinagar.

Alvis senior members collapse because Festum begins to encroach on Mir of the island. Mechanics built a new model of Fafner in a hurry while Alvis young members consider an escape plan, Division Phase Exodus. And Kenji and Sakura get married in order to reassure Sakura's mother.

Dustin killed Kamal in Dacca. Kamal told him that Dustin's brother Jimmy is in Perseus Company now as his last words. Meanwhile, Festum has attacked the moving camp again and again, the number of casualties have been increasing day by day.

Festum suddenly makes a raid on Srinagar just after Asoka forced Miwa to grow up her body and power. Several hours before that, Festum attacked Tatsumiya Island with an overpowering strength. Fafner pilots and Kenji in Siegfried System got into a desperate situation.

The Secretary-General of the Neo-UN, Gallop, wants to exterminate Festum and the people who having a Mir gene as soon as possible. General Burns feels antipathy to her. Meanwhile, the pilots in the island are afraid that fighting will make their side-effects worse.

The detachment led by Mizoguchi left for Srinagar to bring Miwa and Emery with Perseus Company. It includes Hiroto, Akira, Maya and their Fafners, Miwa's mother Yumiko. Festum attacks Tatsumiya Island again. Sui finds them something strange, so he asks Soshi to change the operation.

When Fafner pilots in Tatsumiya Island and Orihime spend time to relax, Alvis has a meeting about SDP and the change of Urd. Then, the pilots begin to use their each SDP without Fafner, but show terrible side-effects.

The camp have been paying a big sacrifice in each battle due to a shortage of commodities. Finally, they arrive at the shore of the Pacific, and then, they find an artificial bird which made by Alvis.

It continues three-sided fight between the Neo-UN force, Festum, and Fafner team under Tatsumiya Island and Perseus Company. Misao and his Mir support Fafner team. Argos platoon captures Mark-VII and Maya during the battle.

Olga send a report to Tatsumiya Island. The side-effects of Canon and Sakura are getting worse. However, Canon continues to use her SDP for getting a great future. Sui finally tells his mother what he really thinks.

Gallop reveals Jonathan's true identity, and she forces Maya to launch their Fafner Mark-Raison. Mizoguchi and Soshi go to negotiate with the Neo-UN for the release of Maya. General Burns tells Mizoguchi what Gallop really plans. Meanwhile, the Boy incites hatred of Jonathan.

Kazuki and Soshi crushed Festum, and they saved the people who were almost assimilated. After the battle, Narein decides that his army takes Miwa, Emery and diminished Asoka to an other safe place with surviving refugees.

The Neo-UN force attacked the camp under ROE Alpha. They captured Mk-V with Hiroto while Kazuki and Soshi fought against Festum. After the withdrawal of them, Narein decides that the camp moves toward the Pacific through Khabarovsk area.

The camp are moving toward Dacca Base behind scheduled. Festum becomes to be able to assimilate using radio signals. Kamal decides to send reinforcements to the camp.